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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_27787.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 63aa MW: 7593.74 Da PI: 6.2385 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 64.8 | 2.6e-20 | 17 | 63 | 1 | 48 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48 lppGfrFhPtdeel+++yLk+k++g+++el e+i+evd+yk+ePwdLp Rsa1.0_27787.1_g00001.1 17 LPPGFRFHPTDEELITYYLKRKINGREIEL-EIIPEVDLYKWEPWDLP 63 79****************************.99**************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-21 | 8 | 63 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 23.287 | 17 | 63 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-9 | 18 | 60 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 63 aa Download sequence Send to blast |
GSQFHRHPRI FMAAVSLPPG FRFHPTDEEL ITYYLKRKIN GREIELEIIP EVDLYKWEPW 60 DLP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-17 | 6 | 63 | 4 | 61 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB005238 | 9e-55 | AB005238.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKP11. | |||
GenBank | CP002688 | 9e-55 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013626927.1 | 1e-28 | PREDICTED: NAC domain-containing protein 86-like isoform X1 | ||||
Refseq | XP_013626928.1 | 1e-28 | PREDICTED: NAC domain-containing protein 86-like isoform X2 | ||||
Refseq | XP_013680578.1 | 1e-28 | PREDICTED: NAC domain-containing protein 86-like isoform X1 | ||||
Refseq | XP_013680579.1 | 1e-28 | PREDICTED: NAC domain-containing protein 86-like isoform X2 | ||||
Swissprot | Q9FFI5 | 2e-28 | NAC86_ARATH; NAC domain-containing protein 86 | ||||
TrEMBL | A0A078C1F2 | 1e-28 | A0A078C1F2_BRANA; BnaC03g08290D protein | ||||
TrEMBL | A0A0D3B1L3 | 2e-28 | A0A0D3B1L3_BRAOL; Uncharacterized protein | ||||
STRING | GLYMA11G33210.1 | 3e-27 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7967 | 13 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17260.1 | 1e-29 | NAC domain containing protein 86 |